SSR

Simple sequence repeat (SSR) is wildly used in biological science. A home-made Perl script was used to find the SSR unit length between 2 to 7 bp and number of replications more than 7 to 2. The information of the SSR makers including the maker primers , loci can be searched in this page.

CDs_SSR

So-called CDS is corresponding to the DNA sequence of a protein sequences, and is the complete corresponding with containing the protein sequence. You may search pineapple SSR primers by gene id, the start and the end position in the genome sequence.

ID: gene id. Eg: Aco025982.1.
Start and End: the position range of the genome, please input a number. If the SSR primers and loci in your target position exist, the result will be print in the screen.

Search SSR by type, chromosome, and the start and end of the segment.

ID: 

Eg:Aco025982.1

Start: 

End: 

                    


Genomic_SSR

Genomic_SSR markers based on known pineapple sequences were deposited in the PGD. Compared with traditional methods, the PGD has adapted a simple channel to identify SSRs from pineapple sequences. A pipeline in Perl script was used to find the SSR loci and then to develop the SSR. Search Pineapple SSR primers by chromosome, the start and the end position in the genome sequence.

Chr(scaf): the chromosome or the scaffold, for example LG01.
Start and End: the position range of the genome. Please input a number. If the SSR primers and loci in your target position exist, the result will be print in the screen.

Search SSR by type, chromosome, and the start and end of the segment you want.

Chr(Scaf): 

Eg:LG01

Start: 

End: 

                    

Click here to show the flow chart of developing the SSR primers.
You can dowload these datas in download page.